My sack of lemons....

Man, that sounds awesome! Smart doing it the way you are, worst case would be all put together and a no start. I'm glad you're doing this, you're like my road map for completing my 6.4.
I noticed that your engine location allows you to keep your brakes, etc., in the stock location. I couldn't do that with the Magnum Force suspension, I was forced to move the pedal location 3 inches to the left.

Does he do something genius like mount the engine centered? or have it that high up? Either of those will cause a chain reaction of a bunch of other things being out of line, driveshaft tunnel is offset, and if its that high the driveshaft angle will be a vibration extravaganza. Hopefully you need to offset the master to clear a hydro boost or something.