Should piston gudgeon pin retainers be replaced at rebuild?

Those clips in the pics, you should replace with spiral locks. If you have spiral locks to begin with and you haven't removed them...and this is a refresh deal. Leave them in and alone.
the picks u are referring to not posted by the O.P. and he is replacing the connecting rods. I have used tru arcs in pistons machined for tru arcs for 40 years without a single problem-like chrysler used in the 340 and hemi