If it doesn't ping with the Holley but does with the Eddy it's most likely just running lean. That's providing the Holley wasn't running so pig rich it drowned out spark knock. Generally when you jet a carb up you should do all corners, not just the front's. Otherwise you have an imbalance. Try jetting up the secondaries too and see what happens. I have noticed every Eddy I messed with was jetted pretty lean out of the box.
BTW: What's your timing set at? I have a 360 very similar to yours (9.8 to 1, mild ported X heads, Lunati 60404 cam which is one size bigger than yours) and mine won't tolerate any more than 34 degrees total timing on 93 octane.