tryin to break in new engine, ruff idle

Yes like dodge freak said,compression test is in order.

I am concerned about number exhaust being loose and once again I agree with dodge freak on seeing if the rockers are moving the same distance down opening.

On the choke opening the flap after a few minutes that is normal and would not be giving you a lean problem.

Is that when your problem begins?
TXDart

But what if there was dirt in the jet or passages, as the choke opens the carb then does get leaner. Simple thing is just push the choke flap down a ways if it moves easy, if not use your hand. That be quicker than a compression test. I'm thinking it was just a lifter bleeding down why the one valve seem loose.