From just what I can see the rotor assembly looks just like mine. I have a feeling it is the way the aftermarket wheels are made with a one fits most concept stamping using different dies before the stud holes are drilled. Your factory wheel has four nubs to hold on the small wheel cover and the aftermarket only has three, is that correct?
I really don't see a problem with the way the wheel is centered. In your first group of pictures you only have one lug nut installed and the wheel is resting on the studs so it makes it look worse than it really is. Looks like a pretty decent fit on the disc hub.