A833 trans alignment issue? Help

I finaly fixed this issue. I removed the trans, again, and started taking some measurements. what I found was that the pilot bushing need to be installed deeper than flush as the FSM said to do. Once I installed another bushing deeper in the Trans slid right in and is working fine. It seems that if the pilot Bushing is mounted flush as called for in the FSM it still is making contact with the taper on the input shaft. I find this strange but that was the issue. Run out was checked as well and was in narmal range.
I did order a needle bearing type bushing and thought of installing it, however the taper would have been even more of an issue. I did not want to try modifying the input shaft like it says to in the bushing instructions. Anyway, Ive been enjoying some nice drive time.