Getting hammered with pop up adds here

Malwarebytes and Superantispyware are both great free programs, and they can both find different things.
Not a bad idea to have both Tony, and remove everything both of them find.
Neither of the free versions do anything to help on thier own unless you tell them to, like scanning and removal so you need to run them yourself.

Superantispyware loads a system tray icon that can be turned off in the settings if you right click the icon in the tray.
This way it won't load when windows starts.

It sounds like you got most of the problem, but there is a high probability that you still have junk in the system, and running both will minimize that possibility.

Badsport, has always given good advice on this stuff.
I use Comodo also, but Avast is very good too for a free program.