Thru the firewall connectors...

An Amphenol type plug might be the best option. We use them at work. They aren't cheap. The type 67Dart273 shows we term "clickie-lock". They are the latest/greatest. I recall buying a few 53-pin ones some years ago for ~$100 ea. You would do better to search for surplus ones on ebay, especially for the older 1/4-turn or multi-turn ones. I have had clue-less managers order us to dump boxes of new Amphenols still in the package in the dumpster during clean-ups for CEO visits. We did so, but went out later and recovered them ($20K worth). I am sure some government facilities sell them cheap as surplus on the pallet, thus they show up on ebay.

Another question is why you need a bulkhead connector. I expect the factory used them to speed assembly. Most cars no longer used them after they changed to fuel injection and the number of wires went way up. I know when I have stripped 80-90's GM trucks (for HEI & such), the harness runs straight thru the firewall, with just one big grommet.
Thanks for reminding me of this. I have a half dozen or so of the Ford grommets from several EEC harness's that I messed with over the years, just need to find them. I have an a-body fuel tank grommet that I am looking at that might work as well. Was just thinking I might be able to keep things neater with plugs...but then again I have learned over the years that the more connections you have the more likely a gremlin is apt to appear.

Does not surprise me about being told to toss them into a dumpster. I lived near a Shimano warehouse/repair center in NJ. Around the 15th of every month they must have done inventory or something as there dumpster was over flowing with brand new Shimano fishing reels. Had a buddy that was a fisherman, he would always go digging to find ones he did not have...