Diablosport cracked code- years?

What model years did the complete cracking of coding start?

I was planning on using Megasquirt, but now am considering a factory computer. Now that Mopar has seen the light and helped Diablosport unlock the coding it seems like picking up a complete motor with wiring harness and computer makes more sense. But only if the torque management can be COMPLETELY disabled.

I am looking at a 2013 truck motor, coupling it with a Viper T56. Can these newer computers be flashed for use with a manual transmission?

Any opinions either way?