Progress stopped:-( Free money

I had my power steering box rebuilt. The steering coupler indexes to the shaft. I centered the pittman arm @ 50% each way and set the toe-in on the discs. I pulled the steering wheel to center the travel equally on both sides and set the wheel correctly. I see the steering wheel also indexes onto it's shaft. I am afraid my wheel will be up on one side after allignment. Will allignment take care of it with adjustment?
DR:???: