Help me diagnose last couple bugs on the swap.

I'd just like to say that on the early systems I think the computer checks for the cam-sync signal every time the engine is cranked. This means that if the engine stopped just after the sensor, she might have to crank at least 2 revolutions before the sensor signals. If it misses that one, it will have to go 2 more.and so on.Sensors get tired.......
The pcm looks for CRANK sensor not cam and the cam sensor sends a signal each rotation of distributor to pcm for injector timing only.