A998 & TF-1 - Harsh 2-3 shift

If that is the case (missing spring), then It will show next time I drop the pan. But I would really like a plan B as well before doing so.

Clutch apply restrictor are never used on the A904's?
I've never had to use the restrictor on a 904 series but that doesn't mean your trans might not benefit from one. The number and rate of springs in the front servo also has an effect on the 1-2 and 2-3 shifts. The stiffer and more springs the softer the 1-2 shift and the quicker 2nd gear releases. If it only has 1 spring and it's not real stiff you'll get a good firm 2nd gear shift but it'll be slow coming off possibly creating overlap into 3rd