HOW BAD IS IT!

Okay the first thing I've got to say is 9 times Outta 10 when you buy a car that someone's been modifying or Jack Wheeling around with you'll run into this crap which is a good time to fix it because you'll run into it the next time you try and fix something. But I will offer some advice on your problems...
try un bolting the transmission from the crossmember and jack the trany up and slip it out?

So what you're saying I can pull the trans with the cross still in place by sliding the it back into the tunnel till the shaft clears and then dropping it out? Is there enough room to do this?

I'll have to do some measuring to see it will work.