Maybe something stuck in the pickup tube? If you get a pressure gauge in place and run it once-twice hard while observing for any pressure drops, you will know right away if something in the delivery system before that point is amiss. You never know how a couple of things can add up and confuse matters: maybe the old pump was giving out and the new one is not up to snuff.... You just gotta get a direct reading on the pressure to the carb under load IMHO. At least the intake seem sounds after your testing there; those were good suggestions to find intake leaks.