I have no Idea where to start

In regards to the A/C system, my advise would be that if you have to have A/C, you would be much better served getting the aftermarket A/C setups now available than trying to piece together an old antiquated system that is inefficient, hard to find parts for, and is unable to run any coolant that you can readily find.

The window piece on the passenger side that you are missing is called the division moulding, and is an easy part to find. Before putting out a lookout for it, look down inside the door, it may be there. It is held on the glass by use of butyl rubber tape, and they often come loose.

Looks like you’re also missing the upper channel seals that the windows roll up into, those are readily available in the aftermarket from places like Steele Rubber or the like.

You were right, it was down inside the rear "wall" of the car. Thanks! one less piece to buy. So the floor is a little worse than I thought. Driver's side too, I'll be replacing those sections. But it is for sure rusting from the inside out. So maybe this weekend I'll remove the heater box and look around up underneath and see if it's the fresh air vent cowl, the wiper arm seals or the windshield seal. Hopefully it's anything BUT the cowl vents, I'm really not wanting to cut the outside of the car apart. Also, since my car is a factory A/C car, I'll try to do a write-up on heater/air box removal with pictures. I tried searching and I didn't really see anything that helped that much, so I'll probably document the step by step. Anyways, thanks for everyone's advice so far. I look forward to working on this little car.

Stephen B.