LA sequential fuel and spark EFI conversion

What's the specs of your cam and are you using an auto or a manual? I'm a running a .040 over 360 around 9.8 compression with a cam of 241int/247exh, 532int/473exh lift center of 108, into a 904 with a 3200 stall converter.

I've been noticing that from cold through warmup I can get the idle to be stable but once I've been out driving around and I'm sitting at a stoplight in drive or in any gear I'll notice my vacuum gauge is lower and the engine is running a little rougher, I haven't really troubleshot it yet but I'm wondering if it has something to do with heat build up.

How much vacuum do you have at idle with that 108CL cam? Does AF change when it gets rougher? And when you say rougher, do you mean it surges a little? Is the Sniper system running on speed density? Can the Sniper control your timing?
One thing I did to smooth out the idle is finite timing control. As you know, changes in timing affect RPM much faster than moving an idle valve. Therefore, when the RPM increased I retarded timing slightly. When RPM dropped, I advanced. This is on a finite scale now. I'm talking tenths of a degree and maybe a hundred RPM.

My engine is slightly more aggressive. 408ci, indybrock heads, solid roller -.594 lift, 278in/286ex, 112 LSA, 9.5:1, Tremec TKO500. I have about 13" of vacuum at idle. I had a much more aggressive cam prior to efi (106LSA) It was way to aggressive for a manual trans as it would make the car "jerky" at cruising speed. I never measured the vacuum with that cam, but I doubt it would have had enough to operate on speed density.