First off, yes machinists make mistakes. I've made plenty. But it damn sure wasn't missing a deck height by that much.
If you cut the deck to low corner, you never make the mistake where one side is shorter than the other. That's why you measure first. But, if the mistake was made, and cutting the second side ended up short, you machine the first side so they are the SAME and make up the difference in head gasket thickness if need be.
And, we have a member who thinks guys with a stock block, probably making less than 500 HP should bore the cam line, then finish the mains and then deck the block and do all that for 200 bucks. Yep. That's what everyone needs.
It's not that hard. You don't need a CNC machine to get the decks straight and square. That's why God made dial indicators.