Engine decking issue(help)

The stud was way worse but any ideas or advise on this? This is the bolt arp sent me to replace the stud

I have no idea. I've not run into this. I've seen it a lot. It just chaps my *** that manufacturers know these problems exist and refuse to do anything about it. Where that step goes into the main cap is supposed to fit flush, I believe and in order to do that, you have a lot of material to remove. I hope the pump body is thick enough.