Not charging after MSD 6AL installation.

What did I do wrong? 69 Valiant.
After installing the MSD 6AL I'm not charging. Took the alt in to have tested, its good but in the car ( running) I'm getting the same reading on the alt as I do on the battery ( I don't understand that if it was reading 14+ at the parts store) . Replaced the voltage regulator and still not charging.
Am I supposed to do something with the remaining 2 wires that were on the ballast resistor? They are currently not hooked to anything and nothing in the MSD instructions.
Thanks in advance.