The reason you go to a competent shop is to eliminate those stacked clearances. You rebuild the rods (or redo those import rods) so each one is spot on. Both decks get squared and cut the same. You check the pistons to be sure the pit height is the same in every one. You must check valve run-out on every valve not just assume they are good to go in those shiny new heads or the "just rebuilt" factory heads from eBay.