New 408 stroker runs rough at idle

I asked you to check the plugs and the RPM that it cleans up, because you very easily could have fouled plugs from the poorly tuned first carburetor. You could also very well have a vacuum leak on the intake. Also the total timing is actually more important than initial timing.
Unless an Edelbrock operates differently than a Holley on the idle circuit, you should be able to screw in the two mixture screws the complete way, and kill the engine. If the engine continues to run with those screws bottomed out, the carb has a fuel leak somewhere or is running on the secondary being out of adjustment.
I'm not sure how experienced you are in initial carb tuning, checking timing, and sealing an intake. But the Blackness of the plugs and the fact that total mechanical timing has not been checked, is really putting the cart before the horse.
First thing I would do is buy a new set of plugs. Check mechanical total timing. And check for vacuum leaks.
You may want to give Tech a call on Monday or we can have a call on Monday.
A super rich mixture gets gas into the fuel, thins the oil, and can be a big problem.
Ok so I replaced the plugs, checked the total timing and I am getting 32 degrees at 3500 rpm. I did have to bump the distributer down a little because as I was revving it up it was starting to creep past 34 degrees. But now it goes 32 degrees max. At idle it now reads about 12 degrees. It still actually does seem to miss even when you rev it. It just seems to run rougher at idle. I sprayed carb cleaner around the intake gasket area on both sides, sprayed carb cleaner at the vacuum line connections at both the pcv valve port and brake booster hose where it connects to the intake. I also sprayed carb cleaner around the base where the carb mounts to the intake manifold and the idle speed didn’t change a bit. I also clamped both the vacuum line that runs to the pcv valve, and the brake booster with no change in idle or vacuum readings. I also plugged both valve cover holes to see if the crankcase was going to pull a vacuum, and it builds a small amount of pressure within sealing it off for 3 seconds. I honestly can’t find a vacuum leak on it.