Yes, that is absolutely correct. I like oldmanmopar's ideas above, but 1/4 inch is a long way. You might see if you can get at least a bit closer moving the bottom of the door in, without creating a noticeable difference at the rocker. The bottom of the fender is easy to to adjust with (you guessed it) fender washers, so I'd concentrate on the back of the door and the rocker. It's possible that the rocker got moved a bit when installed. Sometimes you just have to split the difference and get as close as you can in multiple locations, paying most attention to the places that would catch your eye and that back of that door is definitely an eye catcher...
Let us know how you get it right so others can use those thechniques
