Water in Transmission...

I think you will be ok as long as you do a few full fills and drains after you get it running.

I would drain it now and if your converter has a drain bung open and drain.

If not I would pull the trans and empty the torque converter, refill and drain a couple more times,

Was it water water or radiator fluid and water?
Just distilled water, no anti freeze. We were hoping to get it started today before this debacle.