Bell Never Aligned

No just check the alignment, if it is over .007" total, get the .007" offset dowels and realign. Do NOT drill and resize does not move the alignment. As far as Cummins that is a big diesel and the specs are different. Just drilling and reaming the hole does not move the bellhousing, just makes a bigger hole. You have to use offset dowels to move the bellhousing and the dowels are available. I have 9 sets on the shelf. Plus nothing will ever bolt up in the future.
You need to re-read Magnum Valiant’s post. You align the bell housing with the dowel pins removed then drill the dowel pin holes oversized. The only issue I see is that the bell housing and the drill centerline must not move during the drilling process. If it were me I’d sandwich an oversized steel plate between the bell housing and the block and use a mag drill. The one problem that this creates is that the block and bell housing have oversized dowels and dowel holes so switching transmissions or bell housings becomes a problem in the future. With that said I’d use offset dowels.