Cyl head/valve cover/intake clearances

I'm using A/M aluminum heads and a air-gap type intake and Mopar Performance cast valve covers with the thick (.200") cover gaskets, and I seem to have some interference between the intake runner ends and the valve covers. When seated with regular Fel Pro intake gaskets the intake runners are a little (1/16") proud of the head gasket rail and seem to either touch or be very close to the rim of the valve cover, to where it looks like the covers wouldn't pull down enough to properly seal. My instinct is to file down the upper edge of the intake's runner that 1/16th and if that doesn't do enough, then grind/file relieve the edge of the valve cover to get clearance. Any further suggestions or solutions? All donations will be gratefully accepted. Thx.!