Bypassing dual ballast resistor

Depends how you did the bypass. Just jumper wires? Then shouldn't matter, if you're trying to keep the "stock look" plug 'em in.
Are you changing over to an aftermarket ignition? What type? If you're keeping the Chrysler electronic, get ready to burn up some coils and ignition modules.
Yes I put a msd ready to run distributor I have a dual ballast resistor 1 side has a jumper in it from the factory it has a light tan with a large blue the jumper to this is I believe brown tan on the bottom and blue on top the other plug has 2 wires with no jumper in it 1 on top is green and the 1 on bottom is I believe brown I disabled the green because that went to the old 5 plug ecu do I now take the brown wire from the plug that had the green wire that I disabled and connect that to the bottom tan wire or the top blue wire of the plug that has the factory jumper wire