Bypassing Ballast Resistor / Installing Pertronix Ignition

I have a '66 Plymouth Fury and will be installing a Pertronix Ingitor II & the Flame Thrower II and was wondering if jumping the ballast resistor impacts the electronic voltage regulator? The previous owner removed the original voltage regulator and installed a "dimple-style" voltage regulator like the one attached here. Since it (dk blu-TR to dk blu (to volt reg)) currently runs through the ballast resistor along with the coil wiring, isn't it receiving reduced current and if so, shouldn't that be left attached to the ballast resistor and only bypass the wire(s) for the coil?