you mention some very meaningful things here that are subtle nuances most gloss over.
small upgrades can reap huge benefits if the recipe is just right. things like when you have the correct master cylinder bore, with the correct caliper bore you can increase your braking power without increasing the force needed at the pedal. the same for adding stainless flex lines in place of rubber can give better pedal feed back.
i upgraded a car for a client from 10.98's to the cross drilled/slotted 11.75's and some decent pads and it was a noticeable difference. then when combined with a 17" rim and larger rubber they could really be put to use and made for an even better system.