65amp wiring/trouble shooting

I mean it starts at the starter relay. There are only two wires in the chart, but I count like 6 or so on my car.
Exactly. Thats what I meant in the question about standard versus optional.
I'm not really sure what specific wires you mean. Only thing I know to be different from a "normal" harness is the ammeter wires, which is split in two wires (alternator wire, R6E 8BR), continuing as R6D 8BK / C13 12BK). Those two black wires lead to the ammeter, together with AIF 8R.
Chrysler had a standard harness.
When the optional alternator or heated back light was installed, another set of wires was added and the standard wires cut, removed or left in place. We don't know what the factory workers actually did.

Standard battery circuit connection at the starter relay is just sires A1A and A1B
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For your car, A1E and A1F were added.
A1B was left in place even though it wasn't going to be used.
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Now lets see if we can explain the other wires on the starter relay.
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When the key is all the way in the start position, power is available in wire S1.
Inside the relay, this connects with wire S4. If the safety switch on the transmission is closed, the circuit will be complete.
Current flows through the key switch and activates the starter relay.
When the relay is activated, the battery junction gets connected to the terminal below it with wire S5.
Wire S5 goes to the solenoid connection on the starter. The solenoid activates and connects the heavy cable on the starter to the starter windings. Starter is now powered.

This leaves "Brown 2" wire.
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