Double pump brakes

OP how does the pedal feel? It should be rock hard almost. If not you have air in the system. Otherwise I'd look into bleeding the brakes

For those claiming you "must" have a disc brake master, I have 4 wheel disc. My pedal, always one stroke, goes down just less than half way and is ROCK hard. My car has 73/4 Duster/ Demon front brakes and a Ford/ Lincoln Versailles factory disk brake, 9" rear axle
When it doesn't go through the floor, it feels fine, solid
I am wondering when you changed the rear wheel cylinders, that the diameter of the cylinders somehow changed.
Not sure, I changed the rear end ages ago, long before this pedal feel became an issue