I also noticed that with a Felpro Gasket kit I just bought. But when I bought just the oil pan gasket a while back it came with the right gasket. I would think the gasket without the stubs would seal up just fine. The stubs were just there to align the rubber where as the smooth ones align with the sides. What worries is me is the torque covered cover; will the rubber side sticking out the back cause fitment problems? Probably not but something to look at.
As for the cork sides, I wipe both surfaces down with Brake Parts Cleaner and fresh paper towels until they are oil free. Then you can apply a thin film of RTV sealer on the pan side only, lay gasket down, they let it set up a few minutes. If you don't over tighten it won't squish out. And small dabs of sealer in the corners is needed to too to keep it from leaking.