As far as the exhaust manifold to pipe studs, I had to take both of those studs out and replace them with bolts [grade 8]. You can get them out. Bolts will work just fine, i've been using them for years with no leaks.
With the 3 bolts that connect the intake and exhaust manifold together, those are probably rusted pretty good if they've never been removed before. I'd carefully get them all out, soak them with penetrating oil. Once removed chase the threads with a tap. The 2 outside ear bolts should be pretty easy to find. The long bolt, or stud, that goes on the side closest to the ports can be harder to find for the exact length. I just got a piece of threaded rod and used it, cut to length.
If any of the 3 bolts that connect the intake to exhaust break don't panic. Just get it out (left hand drills, easy-out, etc). The single bolt closest to the ports can be drilled and taped oversize on the exhaust manifold, that's what I had to do. Even easier, the 2 ear bolts can just be drilled out on the exhaust manifold if needed. Just put a nut below the ears instead. You might need to drill out the intake holes a little for clearance, but doubtful.
Grade 8 hardware would be a good choice for replacement.