Not sure why you added all that wiring and relays to the back side of your alternator with your HEI setup, that wiring should be left stock. That is probably what is causing your charging issues.
Just use and E-Coil from like a '95 F-150 ford pickup, simple + - hookup spades and you run straight 12 volt to power it with no ballast resistor.
About as simple as it can get, and works great too.
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Way hotter sparks than the round stock coils.
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E--coil goes in line ^^^ where the yellow coil is pictured here.
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