I noticed in your pix that the measurement of the .5" below deck was done at the thrust faces, where I wouild expect pistons rocking in the bores a bit would make that vary. It would best to measure at 4 points around the piston top (above both thrust faces and above both pin bores) and then average. I suspect that unless you followed procedues like that in the measurments then there is some variability in the measured data... Lots of hard work there, and all very interesting.
I also noticed this. I would take your measurements on the centerline of the piston pin on both sides.