Obviously domed pistons will give more compression than flat tops if everything else is equal, but everything else doesn't have to be equal.
For me, the easiest thing to deal with is a flat top piston. Makes the math easy and lowers your chances for interference. And can yield good compression numbers with open or closed chamber heads depending on what you're looking for. Especially if you're just looking for a good pump gas engine with 9 to 9.5:1 compression, you can easily do that without domes with lots of different heads.
The open chamber 340/360 heads run like 65-73cc for the chamber. But even the ones that are 73cc's can be cut down to 65. The 308's that I have on my 340 were 65cc's from the factory. They got up to like 66/67 with the bowl work for the 2.02/1.60 valves, and back down to 65 with a small cut to true them up.
Forget the quench numbers, the problem with the over the deck pistons is that if you want to change heads at any point most of the aftermarket heads are closed chamber. Then you end up with a piston to head interference issue, and you either buy the modified Eddy's for 340's (which puts you back with an open chamber head) or you run a really thick head gasket. My pistons are only .018" over the deck, and it makes a closed chamber head a problem, which makes most aftermarket heads a problem. Not impossible by any means, but it can get complicated. And if the goal is just a nice street engine there's no reason to deal with complicated.
With a flat top piston it's just easier to deal with, you can run open or closed chamber heads and set the exact compression with a reasonable thickness head gasket and/or a small cut on the heads, which they may need anyway if you're dealing with rebuilding 340/360 heads. And if you start doing anything with the heads other than a straight up stock rebuild, you rapidly approach OOTB aluminum head prices.