A method that I have used on other similar situations but never on one like yours is this;
I take a big iron or brass bar and a hammer. I appy the bar to the shaft and give it a few whacks. Then I rotate the shaft about 1/8 turn and repeat . Thus I work my way all 'round the shaft. This knocks the corrosion loose and away from the shaft. It hassn't always worked, but mostly does. And no you wont bend the input. That shaft is far stronger than any force you can put on it with a hammer,from through that window. And the input bearing is too far away to absorb much. Besides its probably ready to be replaced anyway. That just leaves the pilot bushing. And the last one I bought was under $2. So wail away. Oh yeah getting that fork-pivot out to provide room,will be fun.
I should also mention that Rustys method has always worked for me as well.
I also remember that of the three different "blow-proof" bellhousings that I have installed, ALL three were an extremely tight fit between the pilot hole and the retainer.
Get vigorous!
One more thing; Years ago,when I worked in a driveline rebuilding shop, they started me off doing manual trannies. I noticed a few of them (mostly GMs)had strange wear patterns on the pilot ends of the input gears. I attributed that to having suffered seizures in the pilot bushings.I think this was mentioned by Rusty? I just wanted to concur. In the few M/T Mopes that I have owned, that bushing was not very tight in the crank, so
.............Get vigorous.
I would put a chain around the tail, and yank it out with that 8-wheeled FrankenWagon. I think that'd do it.Dont forget to engage the E-brake. Heh-heh.