No added weight in your case IMHO..... since you have gone lighter on the pistons, then the weight ought to come off, not be added on. We removed weight (81-82 grams from each end counterweight) from a 273 crank, over towards one edge of the counterweight. The 273 crank is already factory set up for a lighter bobweight, so we would have taken even more weight off of a 340 crank. Our total bobweight was 1893 grams due to using lighter SCAT rods; you're not changing the rods, so it won't drop that much. (Hope all that makes sense...)
I suspect he was speaking in general about adding weight. (Did he know what nominal bobweight you would go from and to, before and after the piston change? If not, then he is likely just speaking in general and explaining the pricing.) Perhaps it is possible in very odd cases where you can't get the right amount off in the right place and have to add weight on the opposite side just due to that, but I have no direct knowledge of any such cases.. nor where you could add weight to the 'opposite side' on a SBM crank.
How many miles have been run? I would be inclined to keep the rings in order and arranged per pistons and not hone. You ought to mark the pistons with filed markings and group/tag the rings ahead of time and ask him to not swap rods or anything around so the bearings and rods and pistons can all be kept in order. Not sure it will make any difference, but not sure it won't!